Trame Jupyter Backend for PyVista#
PyVista has the ability to display fully featured plots within a Jupyter environment using Trame. We provide mechanisms to pair PyVista and Trame so that PyVista plotters can be used in a web context with both server and client-side rendering.
The server-side rendering mode of the Trame backend works by streaming the
current render window to a canvas within Jupyter and then passing any user
actions from the canvas back to the VTK render window (this is done under
the hood by the vtkRemoteView
in trame-vtk
.
For example, both sections of code will display an interactive canvas within Jupyter:
import pyvista as pv
sphere = pv.Sphere()
# short example
sphere.plot(jupyter_backend='trame')
# long example
plotter = pv.Plotter(notebook=True)
plotter.add_mesh(sphere)
plotter.show(jupyter_backend='trame')
For convenience, you can enable trame
by default with:
import pyvista as pv
pv.set_jupyter_backend('trame')
Trame Jupyter Modes#
The PyVista Trame jupyter backend provides three modes of operation (technically as three separate backend choices):
'trame'
: Uses a view that can switch between client- and server-rendering modes.'server'
: Uses a view that is purely server-rendering.'client'
: Uses a view that is purely client-rendering (generally safe without a virtual frame buffer)
You can choose your backend either by using set_jupyter_backend()
or passing jupyter_backend
on the show()
call.
import pyvista as pv
pv.set_jupyter_backend('client')
pv.Cone().plot()
import pyvista as pv
pv.set_jupyter_backend('trame')
pl = pv.Plotter()
pl.add_mesh(pv.Cone())
pl.show(jupyter_backend='client')
Installation#
Using pip, you can set up your jupyter environment with:
pip install 'jupyterlab>=3' ipywidgets 'pyvista[all,trame]'
Remote Jupyter Host#
When using PyVista in Jupyter that is hosted remotely (docker, cloud JupyterHub,
binder, or otherwise), you will need to pair the Trame backend with either
jupyter-server-proxy
or trame-jupyter-extension
.
Jupyter Server Proxy#
Jupyter Server Proxy lets you access the Trame server hosting the views of the PyVista plotters alongside your notebook, and provide authenticated web access to them directly through Jupyter.
To configure PyVista and Trame to work with jupyter-server-proxy
in a remote
environment, you will need to set some options on the global PyVista theme:
The default for server_proxy_prefix
is '/proxy/'
and this should be sufficient
for most remote Jupyter environment and use within Docker.
This can also be set with an environment variable:
export PYVISTA_TRAME_SERVER_PROXY_PREFIX='/proxy/'
The prefix will need to be modified for JupyterHub deployments.
On MyBinder, the JUPYTERHUB_SERVICE_PREFIX
string often needs to prefix
'/proxy/'
. This makes it so the prefix includes the users ID in the URL.
In PyVista, we automatically check for the presence of this variable and
prepend it to the server_proxy_prefix
.
Trame Jupyter Extension#
Trame Jupyter Extension enables the trame server and client to communicate over the existing Jupyter Comms infrastructure, instead of creating a separate WebSocket connection.
Using this extension removes the need for a secondary web server and thus
jupyter-server-proxy
.
Using pip, you can install the extension:
pip install trame_jupyter_extension
If using Jupyter Lab 3.x, make sure to install the version 1.x of the extension:
pip install "trame_jupyter_extension<2"
Once the extension is installed, you can select whether PyVista will use it by
setting the following flag to True
or False
:
Setting Remote Jupyter Host with an Environment Variable#
You can set the Remote Jupyter Host manually with the flags discussed above,
but these need to be set every time the Jupyter kernel restarts. In some environments,
it may be more efficient to configure the Remote Jupyter Host with an environment variable.
If set, the value for PYVISTA_TRAME_JUPYTER_MODE
will determine the values of
these two flags:
If set, the accepted values for PYVISTA_TRAME_JUPYTER_MODE
include 'extension'
, 'proxy'
, and 'native'
.
The following table shows how each accepted value will affect the two flags, as well as any precondition
that must be true for the value to be applicable. To meet these prerequisites,
review the sections above for installation instructions.
|
Description |
Condition |
server_proxy_enabled |
jupyter_extension_enabled |
---|---|---|---|---|
“extension” |
Use Trame Jupyter Extension |
Extension must be available |
False |
True |
“proxy” |
Use Jupyter Server Proxy |
Proxy must be available |
True |
False |
“native” |
Do not use Extension nor Proxy |
None |
False |
False |
Other Considerations#
It may be worth using GPU acceleration, see Off-Screen Plotting GPU Support.
If you do not have GPU acceleration, alternatively, an offscreen version using OSMesa libraries and vtk-osmesa
is available:
pip uninstall vtk -y
pip install --no-cache-dir --extra-index-url https://wheels.vtk.org vtk-osmesa