Moving Isovalue

Make an animation of an isovalue through a volumetric dataset

from __future__ import annotations

import numpy as np

import pyvista as pv
from pyvista import examples

vol = examples.download_brain()
vol

Header	Data Arrays
ImageData Information N Cells 6998400 N Points 7109137 X Bounds 0.000e+00, 1.800e+02 Y Bounds 0.000e+00, 2.160e+02 Z Bounds 0.000e+00, 1.800e+02 Dimensions 181, 217, 181 Spacing 1.000e+00, 1.000e+00, 1.000e+00 N Arrays 1	Name Field Type N Comp Min Max image_data Points uint8 1 0.000e+00 2.550e+02

Now lets make an array of all of the isovalues for which we want to show.

values = np.linspace(5, 150, num=25)

Now let’s create an initial isosurface that we can plot and move

surface = vol.contour(values[:1])

Precompute the surfaces

surfaces = [vol.contour([v]) for v in values]

Set a single surface as the one being plotted that can be overwritten

surface = surfaces[0].copy()

filename = 'isovalue.gif'

plotter = pv.Plotter(off_screen=True)
# Open a movie file
plotter.open_gif(filename)

# Add initial mesh
plotter.add_mesh(
    surface,
    opacity=0.5,
    clim=vol.get_data_range(),
    show_scalar_bar=False,
)
# Add outline for reference
plotter.add_mesh(vol.outline_corners(), color='k')

print('Orient the view, then press "q" to close window and produce movie')
plotter.camera_position = [
    (392.9783280407326, 556.4341372317185, 235.51220650196404),
    (88.69563012828344, 119.06774369173661, 72.61750326143748),
    (-0.19275936948097383, -0.2218876327549124, 0.9558293278131397),
]

# initial render and do NOT close
plotter.show(auto_close=False)

# Run through each frame
for surf in surfaces:
    surface.copy_from(surf)
    plotter.write_frame()  # Write this frame
# Run through backwards
for surf in surfaces[::-1]:
    surface.copy_from(surf)
    plotter.write_frame()  # Write this frame

# Be sure to close the plotter when finished
plotter.close()

Orient the view, then press "q" to close window and produce movie

Tags: plot